Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs75338776 chr11:24247973 A/G 0.000102 485 30.8 34.62 20.47 KM Plot
PRAD rs75391217 chr5:171530612 C/G 3.52E-7 491 30.87 32 13.17 KM Plot
PRAD rs7539952 chr1:31749315 A/T 1.82E-6 493 22.85 31.25 31.27 KM Plot
PRAD rs75405317 chr8:54172176 T/C 2.73E-6 492 31.32 26.93 49.93 KM Plot
PRAD rs75431224 chr6:7199532 A/T 0.000145 488 32.13 27.67 26.95 KM Plot
PRAD rs7544952 chr1:31779841 T/C 8.6E-6 491 22.87 31.33 30.97 KM Plot
PRAD rs75479205 chr6:7255610 A/G 5.05E-5 473 32.27 28.22 28.63 KM Plot
PRAD rs7548747 chr1:202724074 A/C 5.26E-6 493 30.87 29.17 37.17 KM Plot
PRAD rs7549430 chr1:31722311 A/G 2.41E-6 492 22.83 31.27 31.2 KM Plot
PRAD rs75509863 chr2:239200360 C/T 9.8E-6 481 31 30.47 11.57 KM Plot
PRAD rs7551708 chr1:6715901 T/C 7.47E-5 491 29.2 31.62 30.73 KM Plot
PRAD rs75582255 chr11:129952008 A/G 2.05E-6 493 30.8 32.22 22.8 KM Plot
PRAD rs75600101 chr4:187810501 G/A 1.9E-6 485 31.23 28.57 26.8 KM Plot
PRAD rs75628070 chr4:187812399 C/G 2.06E-6 483 31.13 28.57 26.8 KM Plot
PRAD rs75632426 chr12:732859 C/T 0.000144 489 31.37 28.13 22.67 KM Plot